PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma114g00860.1
Common NameZOSMA_114G00860
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 139aa    MW: 15315.6 Da    PI: 10.2127
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma114g00860.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.42.5e-082464954
                      HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH  9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                       r RR+ri  +f  L+ l+P        K++ +++L +Av+Y+k L
  Zosma114g00860.1 24 ARERRHRISAKFKILQGLVPGG-----SKMDTVSMLDEAVNYVKFL 64
                      699*****************95.....5****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.6841564IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-132073IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.56E-122168No hitNo description
Gene3DG3DSA:4.10.280.104.3E-112168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-112170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.0E-62464IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MCTTKRSKRR GGSKLSTDPQ SVAARERRHR ISAKFKILQG LVPGGSKMDT VSMLDEAVNY  60
VKFLKKQIWF HQSILITNIA NTQLPPPPSS LPALFGFPTS SGLDITNYSL PPLPSTVYSG  120
SFLPEDYYND GYLPSSYK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010495035.15e-36PREDICTED: transcription factor bHLH140-like
SwissprotQ9M0412e-32BH140_ARATH; Transcription factor bHLH140
TrEMBLA0A0K9Q2R82e-98A0A0K9Q2R8_Z
STRINGPOPTR_0006s10350.15e-32(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85533243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.12e-32APRATAXIN-like